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popN popN pcrD pcrD pcrH pcrH pscJ pscJ pscL pscL PA1700 PA1700 pcrG pcrG pscC pscC pcrR pcrR popD popD pcrV pcrV
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
popNType III secretion outer membrane protein PopN precursor; Product name confidence: Class 1 (Function experimentally demonstrated in P. aeruginosa). (288 aa)    
Predicted Functional Partners:
pcrD
Type III secretory apparatus protein PcrD; Product name confidence: Class 1 (Function experimentally demonstrated in P. aeruginosa).
 
  
 0.999
pcrH
Regulatory protein PcrH; Product name confidence: Class 1 (Function experimentally demonstrated in P. aeruginosa).
 
  
 0.994
pscJ
Type III export protein PscJ; Product name confidence: Class 1 (Function experimentally demonstrated in P. aeruginosa).
 
  
 0.992
pscL
Type III export protein PscL; Product name confidence: Class 1 (Function experimentally demonstrated in P. aeruginosa).
 
  
 0.992
PA1700
Conserved hypothetical protein in type III secretion; Product name confidence: Class 4 (Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences).
  
    0.990
pcrG
Regulator in type III secretion; Product name confidence: Class 1 (Function experimentally demonstrated in P. aeruginosa).
  
  
 0.989
pscC
Type III secretion outer membrane protein PscC precursor; Product name confidence: Class 1 (Function experimentally demonstrated in P. aeruginosa).
 
  
 0.989
pcrR
Transcriptional regulator protein PcrR; Product name confidence: Class 1 (Function experimentally demonstrated in P. aeruginosa).
  
  
 0.988
popD
Translocator outer membrane protein PopD precursor; Product name confidence: Class 1 (Function experimentally demonstrated in P. aeruginosa).
  
  
 0.986
pcrV
Type III secretion protein PcrV; Product name confidence: Class 1 (Function experimentally demonstrated in P. aeruginosa).
  
  
 0.984
Your Current Organism:
Pseudomonas aeruginosa
NCBI taxonomy Id: 208964
Other names: P. aeruginosa PAO1, Pseudomonas aeruginosa PAO1, Pseudomonas sp. PAO1
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